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AoB PLANTS

Oxford University Press (OUP)

Preprints posted in the last 30 days, ranked by how well they match AoB PLANTS's content profile, based on 11 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

1
Woodland age, ancient trees, and population size as proxies of genetic diversity

Mattana, E.; Atkinson, N.; Martinez-Velasco, I.; Oliva-Garcia, D.; Ramos, I.; Truchot-Taillefer, C.; Blake, O.; Chapman, T.; Mastretta-Yanes, A.

2026-05-18 plant biology 10.64898/2026.05.16.725641 medRxiv
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Climatic and biogeographic variables are often used as a proxy for tree genetic diversity, but local factors can also influence it. We propose that woodland age, presence of ancient trees, and population size could impact genetic diversity. Using the RBG Kew UK National Tree Seed Project as a study case, we examined how these factors are accounted for during seed collection. We found 42% of tree seed collections come from ancient woodlands and that 8.4% overlap with ancient trees. Sampled forest patches size ranges from few individuals to several thousand. We then carried out a pilot to examine the role of population size on functional traits variation, testing the relationship between population size and seed germination and seedling thermal stress sensitivity in three populations of the Betula pubescens Ehrh. complex. We found that seeds and seedlings from larger populations showed higher fitness and stress resistance. Our results highlight the importance of local factors to predict variation in functional traits, relevant for tree resilience. Existing seed collections of native species stored in conservation seed banks offer a valuable resource to explore these factors and improve our understanding of genetic diversity in tree populations, with implications for biodiversity conservation and forestry production.

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Growth under constraints: root tip development controls trade-offs between speed and mechanical efficiency

Dupuy, L. X.; Yao, J.; de las Heras Martinez, G.

2026-05-14 plant biology 10.64898/2026.05.14.724970 medRxiv
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Growth kinematics and soil mechanics are key to explain how roots overcome the mechanical resistance of soil, yet few studies are linking these two factors. Formulas for cone penetration tests are typically used to infer the friction experienced by roots, but these fail to consider how growth affects the external forces applied on the root. This study formalised how expansive growth in the root apical meristem can reduce soil friction, and applied the framework to analyse the growth strategy of 6 plant species. The results of the analysis revealed trade-offs between reducing frictions, maintaining a desired growth trajectory and elongation rate. A shorter elongation zone can reduce the fraction of the mechanical energy lost to friction, but this is done at the expense of the elongation rate. A sharper tip or increased radius can help roots maintain the elongation rate at no energetic cost, but these strategies come with the cost of growth instability (tortuous roots) and decrease in specific root length respectively. During establishment, root strategies may therefore occupy a 2-dimensional trait space in which the mechanical efficiency of growth is balanced against the explorative-exploitative trade-off. HighlightsGrowth and form of root tips explain how plants overcome mechanical resistance from the soil Trade-offs link the energy lost by friction, growth stability and elongation rate of roots Larger roots allow faster growth independently of these trade-offs New framework formalises plants strategies to acquire soil resources

3
Guard cell size and pore aperture influence stomatal closure kinetics

Muir, C. D.; Lim, W. S.

2026-05-18 plant biology 10.64898/2026.05.17.725794 medRxiv
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O_LIIn fluctuating environments, the kinetics of stomatal opening and closing influence the balance between carbon gain and water loss. Smaller guard cells may respond faster to fluctuating environmental conditions because of their greater surface area for osmolyte flux relative to cell volume. A related hypothesis is that operational stomatal conductance (gop) is often well below its theoretical maximum (gmax) because at this stomatal aperture, guard cell volume is poised to change rapidly with small changes in turgor pressure. C_LIO_LIWe analyzed 2,124 estimates of stomatal closure kinetics in response to an abrupt increase in vapor pressure deficit (VPD) among 29 diverse wild tomato populations in the genus Solanum. C_LIO_LILeaves with small guard cells and a lower gop to gmax ratio (fgmax) closed faster, but explained variation in kinetic parameters at different levels of biological organization. Guard cell size had high phylogenetic heritability and varied relatively little within populations, whereas fgmax varied mostly among individuals and between light intensity treatments. C_LIO_LISmaller stomata can be speedier, but only if stomata are held at an aperture where they are responsive to changing turgor pressure. Selection on stomatal speed may influence not only anatomical traits like guard cell size, but also physiological controls on gop. C_LI

4
Water beneath the pavement: assessing the benefits of passive irrigation for urban Lophostemon confertus trees in western Sydney

Siclari, D.; Tjoelker, M. G.; Perera, C.; Pfautsch, S.; Rymer, P. D.; Marchin, R. M.

2026-05-03 plant biology 10.64898/2026.04.29.721794 medRxiv
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Urban environments typically experience higher temperatures than surrounding natural landscapes, making urban vegetation crucial for cooling local areas and improving the health of city residents. Impervious urban surfaces limit the absorption and retention of precipitation, potentially limiting tree water access and threatening long-term survival. Here, we measured tree physiology and growth of Lophostemon confertus (Queensland brush box) trees to investigate how a passive irrigation system that stores stormwater affected the performance of young, establishing trees in a hot and dry suburb of western Sydney, Australia. During the 2024-2025 austral summer, three years after planting, the local climate was periodically hot and dry, with a total of 16 days above 35 {degrees}C. Irrigated L. confertus trees had higher water availability (i.e., higher predawn leaf water potential,{Psi} pre), lower water stress (i.e., higher midday leaf water potential,{Psi} mid, more frequently above turgor loss point), greater stomatal conductance (gs) on hot and dry summer days, and reduced leaf temperatures (Tleaf), compared to control trees. No significant differences in growth rates were observed between irrigated and control trees during the first three establishment years, but irrigated trees had greater crown survival during the hot, dry summer. Our results suggest passive irrigation may mitigate periods of short-term heat and drought stress in urban trees by increasing water access to support transpiration that prevents leaves from overheating, improving tree health. Higher tree transpiration may lead to greater ecosystem services by increasing cooling benefits, contributing to mitigation of urban heat island effects.

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Warming Reduces Cold Hardiness of Boreal Plants but Damage Risk Varies by Species and Season

Campos-Arguedas, F.; Kirchhof, E.; North, M. G.; Pearson, K. J.; Guilliams, M. P.; Hanson, P. J.; Kovaleski, A. P.

2026-05-18 plant biology 10.64898/2026.05.15.725179 medRxiv
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Winter warming is altering plant exposure to cold events, yet its effects on seasonal cold hardiness dynamics remain poorly understood. Here we quantified bud cold hardiness across four dormant seasons in a boreal peatland forest whole ecosystem warming experiment. Across a +0.00 to +9.00{degrees}C warming gradient, we semi-regularly measured cold hardiness in two overstory (Larix laricina and Picea mariana) and two understory species (Chamaedaphne calyculata and Rhododendron groenlandicum). Warming reduced cold hardiness in fall and spring by delaying acclimation and advancing deacclimation. However, risk was only increased in late winter and spring for three species. Warming reduced snow cover, increasing temperature variability and cold damage to understory shrubs. Together, our results show that cold damage risk depends on species traits, microclimate, and seasonal timing.

6
Selection For Yield Enhanced Rhizobial Mutualism In Pea

Porter, S.; Millar, N.; Coyne, C.

2026-05-18 plant biology 10.64898/2026.05.15.725492 medRxiv
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Crop improvement can enhance food security, but side effects, such as trade-offs between valuable agronomic traits, are common. Likewise, fertilisation helps ensure high yields, but can devalue mutualisms with soil microbes that would otherwise be essential for nutrient acquisition. If the need for nutritional mutualisms is reduced in crops, mutualisms could be disrupted by selection relaxation or allocation trade-offs. Thus, crops could achieve high yields in spite of, or because of, disruption of nutritional mutualisms. Alternatively, the highest-yielding plants might flourish because they maximise nutrient acquisition from both symbionts and the soil. Here, enhanced mutualism could evolve over the course of agricultural crop improvement. To investigate whether high yields in cultivars and wild accessions are negatively or positively genetically correlated with outcomes in the legume-rhizobia mutualism, we measured whether yield and symbiosis traits trade-off or are positively genetically correlated among cultivars and wild accessions. We also tested whether this relationship differs between accessions released before or after 1950. We measured genetic correlations between yield and mutualism traits in 87 domesticated pea (Pisum sativum) accessions in a common garden agricultural field across three years. Seed yield and N2 fixation (%Ndfa) were positively genetically correlated. While N fixation was more strongly predictive of yield in the pre-1950 accessions than the post-1950 accessions, the underlying positive genetic correlation between the traits did not differ between the groups. The positive genetic correlation between yield and N2 fixation indicates that selection to increase yields has maintained or increased the benefits of the rhizobial mutualism in pea. Our findings predict that breeding to increase yield may continue to produce pea cultivars that get a greater proportion of their N from rhizobia, enhancing symbiotic mutualism and reducing the proportion of N supplied by fertilisation.

7
Beyond seed counts: divergent climatic windows shape seed mass and viability in European beech

Fuchs, H.; Dyderski, M. K.; Jastrzebowski, S.; Ratajczak, E.

2026-05-22 plant biology 10.64898/2026.05.21.726811 medRxiv
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Forest regeneration depends not only on how many seeds trees produce, but on the physiological quality of those seeds. Yet while climate-driven shifts in seed quantity and masting have received sustained attention, the parallel question of whether climate change degrades seed quality remains poorly resolved. Using a nationwide dataset of seed mass and viability in European beech (Fagus sylvatica L.) collected between 1996 and 2024 (13,349 seed lots from 381 forest districts across Poland), with climate-quality analyses focused on 5,374 freshly harvested seed lots from 353 districts (2004-2023), we asked whether the two components of seed quality respond to different seasonal climatic windows, and whether harvest-year climate also shapes seed performance during long-term cold storage. Seed mass and seed viability were only weakly correlated (Spearmans {rho} = 0.15), acting as two independent dimensions of seed quality. Both revealed substantial temporal variation over the study period, but along distinct trajectories. Seed mass declined markedly between segmented-regression breakpoints in 2009 and 2019, more steeply at higher latitudes, coinciding spatially and temporally with the masting breakdown reported at the species northeastern range margin. Climatic associations were correspondingly divergent. Viability was positively associated with previous summer temperature, consistent with temperature-cued flower initiation, and negatively with spring temperature in the harvest year, plausibly reflecting thermal disruption of early embryogenesis. Seed mass showed no significant association with any seasonal climatic predictor, indicating control by slower or unmeasured processes. Storage duration progressively reduced viability, and this decline was further modulated by climate during seed development, with seeds developing under climatically suboptimal conditions losing viability faster. These results expose a hidden decoupling between seed quantity and seed quality under contemporary climate change, with direct consequences for forest regeneration and for ex situ conservation strategies that assume mast-year seeds will remain viable for decades.

8
Extending the seasons at both ends? Understanding the physiological and genetic context required for stay green mediated yield increase in wheat (Triticum aestivum)

Chapman, E. A.; Orford, S.; Beeby, R.; Lage, J.; Griffiths, S.

2026-05-23 plant biology 10.64898/2026.05.22.727135 medRxiv
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Flowering time and monocarpic senescence are tightly environmentally and genetically controlled. Typically, early flowering and staygreen traits are associated with opposing life-history strategies; stress avoidance versus adaptation; with flowering time an overarching regulator of crop cycle length. We developed RIL populations segregating for Ppd-1 and NAM-1 variation, which are otherwise isogenic. Multi-year field experiments enabled exploration and uncoupling of the relationship between heading and staygreen traits. Heading date manipulation enabled introduction of staygreen traits to their target breeding environments, characterised by a hot-finish. Under moderate stress, we report a 2.9% and 1.9% increase in grain width (P<0.0001), and 5.8% and 3.7% increase in TGW (P<0.0001), plus significantly greater yield (P<0.1) for late heading staygreen RILs homozygous for NAM-A1, and NAM-D1 missense variants, respectively. Grain yield increases were proportionate to the delay in senescence, being greater for the NAM-A1 than the NAM-D1 variant. For RIL populations segregating for both traits, senescence variation was observed relative to heading-date. Regarding grain yield, the staygreen trait-associated increase in source size could not compensate for the Ppd-1a associated pleiotropic reduction in sink size, even under hypothesised continental target breeding environments, with trait competition identified. Therefore, to maximise the benefits associated with staygreen traits, especially in early-heading favouring environments required targeted manipulation of source-sink dynamics, and we propose multiple strategies. HighlightStaygreen traits were associated with extending grain fill duration, increasing grain width, TGW and grain yield. There appears an antagonist relationship between earlier heading and staygreen traits.

9
Effects of leaf removal on photosynthetic activity, fruit yield, and quality of micro-dwarf tomatoes

Usenko, D.; Giladi, C.; Ziv, C.; Helman, D.

2026-05-13 plant biology 10.64898/2026.05.10.724098 medRxiv
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Micro-dwarf tomato cultivars are increasingly considered for urban and controlled-environment agriculture due to their compact architecture and suitability for high-density planting. However, optimal canopy management strategies for these cultivars remain poorly defined. In this study, we evaluated the effects of different leaf removal intensities on leaf-level physiological performance, fruit yield, and fruit quality in three micro-dwarf tomato cultivars (Mohammed, Hahms Gelbe Topftomate, and Red Robin) grown under contrasting seasonal light conditions. Plants were subjected to low (15%), moderate (30%), or severe (90%) leaf removal, and leaf-level gas exchange was measured across canopy layers, along with yield and fruit quality assessments. Severe leaf removal (90%) increased carbon assimilation, transpiration, and stomatal conductance in middle and lower canopy leaves by up to approximately twofold compared with control plants, indicating improved light availability at the leaf level. However, these physiological enhancements did not consistently translate into higher yield, reflecting reduced whole-plant source capacity under excessive leaf removal. Low to moderate leaf removal (15-30%) generally increased or maintained yield and fruit number, whereas severe leaf removal reduced yield in Hahms Gelbe and Red Robin, particularly under low seasonal radiation. In contrast, Mohammed exhibited yield increases of up to 220% under low leaf removal and maintained increased yield even under severe leaf removal under high-light conditions. Fruit quality was largely unaffected by leaf removal, except for total soluble solids, which declined by approximately 12% under severe leaf removal across cultivars, consistent with sugar dilution under source limitation. Overall, these results demonstrate that optimal leaf removal in micro-dwarf tomatoes requires balancing improved canopy light distribution with maintenance of sufficient leaf area for carbon assimilation. Leaf removal thresholds are strongly cultivar- and light-dependent, emphasizing the need for cultivar-specific canopy management strategies in compact tomato systems and controlled-environment agriculture.

10
Chromosomal variability in a clonal crop: Somaclonal change follows the emergence of triploid saffron crocus

El-nagish, A.; Dhar, M. K.; Mann, L.; An, R.; Houben, A.; Blattner, F.; Harpke, D.; Heitkam, T.

2026-05-07 plant biology 10.64898/2026.05.04.722608 medRxiv
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(1) BackgroundSaffron crocus (Crocus sativus) is the source of saffron, the most expensive spice in the world. It evolved about 3000 years ago as a sterile triploid clone in Greece. Since then, saffron has spread across the globe, where regionally distinct practices of saffron cultivation have developed. Despite differences in morpho-physiological traits, genetic variability is low, if present at all. Here, we aim to resolve chromosomal and sequence-associated variability across saffron crocus cultivars from the crops main cultivation areas in Africa, Asia and Europe. (2) MethodsWe used genome-wide DNA polymorphisms obtained through genotyping-by-sequencing (GBS) of 33 saffron and 14 closely related Crocus accessions, which we place into a phylogenetic context. For karyotyping, we compare nine saffron accessions by multi-color fluorescent in situ hybridisation (FISH) with repetitive DNA probes. (3) Key resultsPhylogenetic analyses confirmed the single origin and clonal nature of all saffron accessions. We detected slight DNA differences among saffron crocus genotypes, which were minor compared with those in wild C. cartwrightianus populations. Still, the Iranian saffron accessions form a genetically very narrow group that differs from the other proveniences in population genetic analyses. However, chromosomes of some saffron accessions display variable FISH signals, likely resulting from gains and losses of tandemly repeated DNA. (4) Main conclusionsBased on the high genetic identity and small karyotypic differences, we confirm the clonal origin of the saffron accessions. Nevertheless, as we detected small and regional chromosomal variability, we conclude that at least four somaclonal saffron lineages emerged after saffrons origin. Societal Impact StatementFor millennia, many cultures developed cultivation practices and regional crop varieties. A notable case is saffron, the worlds most expensive spice that is harvested from stigmas of saffron crocus. This flower crop arose 3000 years ago in a singular genome triplication event and since then spread clonally across the globe. By identifying genetic and chromosomal variability in clonal saffron accessions, we highlight regional diversity, support the preservation of traditional knowledge, and underscore the risk of relying on only one clonal lineage. This informs strategies for saffron cultivation, linking cultural heritage with modern genomics to address biodiversity, evolution, and food security.

11
Impacts of different types of florivores on flower metabolomes in the field

Gaar, S.; Müller, C.; Dussarrat, T.

2026-05-03 plant biology 10.64898/2026.04.30.721624 medRxiv
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O_LIHerbivory is a major biotic stress for plants, triggering the induction and modulation of diverse specialized metabolites. Such induction responses are well studied for leaves and have been shown to depend on the herbivore feeding mode. Little is known about changes in flower metabolites and chemodiversity due to florivory type. Moreover, we lack an understanding of the intraspecific variation in such responses and whether these are spatially structured. C_LIO_LIThe aromatic plant Tanacetum vulgare, which shows high intraspecific chemodiversity in terpene profiles, was used to examine chemotype-specific metabolic responses of flower heads to infestation by the inflorescence-infesting aphid Macrosiphoniella tanacetaria or the flower-feeding beetle Olibrus spp. under field conditions. At peak flowering, each plant received both florivory treatments on separate stems, leaving one stem herbivore-free as a control. After four days, flower heads were harvested to analyze terpenes (GC-MS) and metabolic fingerprints (LC-MS). C_LIO_LIWe found stem-specific floral metabolic responses, with florivory altering specific chemical families and their chemodiversity. Levels of a few terpenes decreased following infestation, while none increased. Untargeted analyses revealed that aphid infestation had a lower effect on flower chemistry than beetle infestation, with aphid infestation mainly causing decreases and beetle infestation predominantly leading to increases in some metabolite intensities, but little overlap across treatments and chemotypes. C_LIO_LIOur results demonstrate that floral metabolic responses to florivory are spatially structured, florivore type-specific and shaped by plant chemotype. These findings highlight that the interplay between vascular organization, insect feeding mode, and intraspecific chemodiversity governs how flowers adjust their chemical defenses. C_LI One-sentence summaryTanacetum vulgare showed chemotype-specific responses to florivory by aphids (Macrosiphoniella tanacetaria) and beetles (Olibrus spp.), with aphids causing decreased and beetles increased levels of metabolic features within the same plant individuals, with little overlap in significant features across chemotypes.

12
Crop yields under simulated nuclear winter: a growth chamber experiment

Blouin, S.; Abrams, D. R.; Ben-Zeev, R.; Anderson, C. T.; Lasky, J. R.; Denkenberger, D.

2026-05-07 plant biology 10.64898/2026.05.05.723012 medRxiv
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A global nuclear war could inject soot into the stratosphere, blocking sunlight and causing rapid cooling. Assessments of the resulting agricultural collapse rely on crop models never validated under such conditions. We grew wheat, canola, and potato in growth chambers simulating the light and temperature of an extreme nuclear winter at tropical and temperate sites. In the tropical chamber (18-20 {degrees}C, 200 mol m-2 s-1 PAR), all three crops produced viable yields. Wheat yielded 2.1-2.3 t/ha (n=3 well-watered, n=3 water-stressed pots), 60% of the global average, and single-pot observations of canola and potato suggested biological yields comparable to global averages. In the temperate chamber simulating nuclear winter irradiance (60-360 mol m-2 s-1), wheat stems collapsed under their own weight. Although hand-harvesting recovered 0.6-2.8 t/ha of grain, mechanical field harvest of a flat canopy would recover substantially less. This failure mode was not observed in a higher-light control chamber and is not captured by existing crop models, which may therefore overestimate temperate cereal production under nuclear winter. Canola produced comparable yields under both temperate light regimes without lodging. Empirical screening of additional staples is needed to identify which remain viable under nuclear winter.

13
The stability of fatty acid composition in sunflower oil is dependent on environment and affected by structural variation

Ingold, M.; Gao, Q.; Mandel, J. R.; McNellie, J. P.; Keepers, K. G.; Barb, J. G.; Burke, J. M.; Rieseberg, L. H.; Hulke, B. S.

2026-05-07 plant biology 10.64898/2026.05.04.722759 medRxiv
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In sunflower (Helianthus annuus L.), the composition of fatty acids in the seeds, primarily oleic, linoleic, stearic and palmitic acid, is of utmost importance for oil quality. Despite this, the genetic basis of this trait and its interaction with the environment is poorly understood. Understanding this interaction is critical to improvement of sunflower within the context of climate change. In this work, we incorporated fatty acid composition measurements from the sunflower SAM population and eight environments across an extensive geographic cline into GWAS. The SAM panel consists of 287 varieties representing approximately 90% of sunflower diversity, for which 2.2 million high-quality SNPs with a MAF > 5% are available. For increased power, multivariate GWAS was performed with four different inputs: (i) mean fatty acid composition within each environment, (ii) mean fatty acid composition within each environment omitting high oleic varieties, (iii) trait stability within environments quantified by standard errors among replicate samples ( stability) and (iv) Eberhart and Russells {beta} which quantifies trait stabilities across environments ({beta} stability). All four analyses yielded highly significantly associated SNPs. We found that high oleic varieties exhibited high {beta} trait stability, resulting in substantial overlap in markers between analyses (i) and (iv), with signals being fairly consistent between environments in analysis (i). For analyses (ii) and (iii), significant markers tended to vary between trials. For significant SNPs across all analyses, 147 candidate genes were identified, including promising candidates such as 15 fatty acid metabolism genes, 6 heat shock proteins and 22 transcription factors. Lastly, a large introgression consisting of two flanking inverted sequences on Chromosome 5 was found to coincide with stability in the Georgia trial, suggesting a role in FA composition stability under high heat conditions.

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Afrothismiaceae West of the Dahomey gap: Afrothismia fonensis sp. nov. Critically Endangered and endemic to Pic de Fon forest, Simandou, Republic of Guinea

Cheek, M.; Molmou, D. N.; Delhaye, G.

2026-05-07 plant biology 10.64898/2026.05.05.723002 medRxiv
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The fully mycoheterotrophic, non-photosynthetic Afrothismia fonensis Cheek & G.Delhaye sp. nov. (Afrothismiaceae), is described and illustrated from two sites in submontane forest in or adjacent to the Pic de Fon Foret Classee, Simandou Range, Republic of Guinea. This is the first record of the genus and family in West Africa west of Nigeria. The new species is remarkable for its small size, and for being unique in the genus in the entirely connate intertepaline lobes (in other species of the genus they are free or only partly united) and the longitudinal ridges on the outer perianth tube (unknown in other species). The provisional extinction risk assessment for Afrothismia fonensis is Critically Endangered (CR B1ab (iii)+2ab(iii)+D1) using the IUCN 2012 categories and criteria, due to less than 50 individuals being recorded, and due to the both the very small range and the immediate threats from foraging by red river hogs, trampling by cattle and from de-watering of the adjacent Oueleba iron-ore body where mining began in 2025. It should be noted that mitigation actions are expected to adequately address the risks associated with mining activities, and direct impacts to both areas of Afrothismia fonensis habitat have been fully avoided through relocation of planned infrastructure. We review the importance of the Boyboyba forest, Simandou range, as the West African centre of diversity for non-photosynthetic heteromycotrophs. This new discovery is examined in the context of other recently discovered range extensions to Guinea of Central African genera and families.

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Identical Dormancy Gene Mutations Reveal Unanticipated Relatedness Among Low-Chill Apples

Hussein, M.; Singh, J.; Folta, K. M.

2026-05-18 plant biology 10.64898/2026.05.15.724974 medRxiv
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Apples (Malus x domestica) are popular fruits grown in temperate regions of the world. The various genotypes must meet a specific threshold amount of cold exposure before they are competent to break dormancy, a quantity approximated as "chill hours". Several varieties have been identified that exhibit an ultra-low-chill requirement, or more precisely shallow dormancy, breaking vegetative and floral buds early in spring in response to minimal cold exposure. These ultra-low-chill genotypes originated from the Bahamas ( Dorsett Golden,1960s), Israel ( Anna, 1950s) and Alabama, USA ( Shell of Alabama, 1880s). The separation in time and space implies that each would feature distinct genetic lesions that govern dormancy control, providing discrete mechanisms to incorporate a low-chill trait in variety improvement. However, analysis of microsatellites and ultimately genome sequence indicates that Dorsett Golden and Anna share strong concordance with the Shell of Alabama genotype, as well as other ultra-low-chill varieties. Kinship analysis confirms that all are closely related, despite differences in year and place of origin. All three low-chill genotypes share common mutations in the DORMANCY ASSOCIATED MADS-BOX1(DAM1) gene, a known repressor of vegetative growth during dormancy. Genomic sequence diversity is observed among Shell of Alabama individuals, including differences in DAM1 that match differences in flowering time. The results of this study call into question the pedigrees of the ultra-low-chill apple germplasm and indicate variation in an otherwise narrow genetic base for use in future breeding efforts.

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Reduction of Pollen Number and Anther Length in Bread Wheat Studied by a Nested Association Mapping Population

Hamaya, N.-B.; Kakui, H.; Okada, M.; Jilu, N.; Jung, K.; Nitta, M.; Wicker, T.; Keller, B.; Nasuda, S.; Shimizu, K. K.

2026-05-23 plant biology 10.64898/2026.05.22.727104 medRxiv
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The number of pollen grains, which carry male gametes in seed plants, has attracted interest in genetics, evolution, and breeding. Rapid evolutionary reductions in pollen number and anther length were reported in selfing species as well as domesticated species, although this poses a challenge for hybrid breeding. Here, we studied the variation of pollen number and anther length of the hexaploid bread wheat (Triticum aestivum) by employing a quick pollen counting method. Pollen numbers in cultivars were lower than those in landraces among 54 lines of diverse geographic origins. Using the year of registration of traditional and modern cultivars, we found a reduction in pollen number over the past 150 years. We detected high heritability and variation among Asian landraces and cultivars. Thus, we conducted QTL mapping of pollen number as well as of anther length using nested association mapping lines in which Norin 61 was the common parent. Genomic loci encompassing Green Revolution genes (Rht-B1, Rht-D1, and Ppd-D1) showed significant effects on pollen number and anther length, but their contributions were relatively minor. Although anther length has often been used as a proxy for pollen number in bread wheat, our data showed that their correlations are not necessarily high. Interestingly, we identified a new QTL of pollen number that was not detected by measuring anther length, and, vice versa, a new QTL specific to anther length. These data suggest that pollen number has reduced rapidly in bread wheat but can be modified using the genetic diversity of landraces. Significance statementWe found that modern cultivars of bread wheat have reduced pollen number and shorter anther length, which are common in domesticated species but can be a challenge for hybrid breeding. Using underutilized Asian landraces and cultivars, we reported that new quantitative trait loci as well as loci used in the Green Revolution, are responsible for the traits, which can be employed to increase pollen numbers.

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Transient uncoupling of the Suc-Tre6P-SnRK1 nexus during salt stress associates with biphasic metabolic reprogramming and root plasticity

Barbieri, G.; Parola, R.; Feil, R.; Rodriguez, M. S.

2026-05-12 plant biology 10.64898/2026.05.08.723798 medRxiv
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Soil salinization threatens global agriculture reducing yields, yet the metabolic signals controlling salt-sensitive root plasticity in alfalfa remain unclear. We hypothesize that salinity transiently uncouples the sucrose-trehalose-6-P (Tre6P)- Sucrose non-fermenting kinase 1 (SnRK1) nexus, aligning with a biphasic root metabolic response and altered root architecture. Alfalfa seedlings were grown in a hydroponic system and exposed to 200 mM NaCl, with root samples collected from 1 h to 7 d. While primary root growth and biomass remained unchanged, lateral root development was enhanced under salinity. Early response (1 h-1 d) was characterized by reduced carbon metabolites, low Tre6P, increased malondialdehyde, and SnRK1 activation, with a decline in glycolytic and TCA intermediates. During this phase, sucrose was negatively correlated with both Tre6P and SnRK1. Late response (3-7 d) showed a SnRK1 reactivation, Tre6P recovery, and osmoprotectant accumulation, including increased antioxidant capacity (+75% at 3dpt), proline (+178%), and sucrose (+18%) and starch depletion (-57%) at 7dpt respect to control. These metabolic changes coincided with the enhanced lateral root emergence. These findings indicate a two-phase response: early metabolic downscaling with transient Suc-Tre6P-SnRK1 disruption, followed by recovery with Tre6P restoration, SnRK1 reactivation, osmoprotection, and sustained root plasticity under salinity. HighlightSalinity triggers a temporary metabolic shift in alfalfa roots: plants first conserve energy, then adapt to stress, maintaining lateral root growth and flexible root architecture.

18
Still standing: persistence traits capture belowground plant functions beyond resource exploration and acquisition

Tumber-Davila, S. J.; Andraczek, K.; Laughlin, D. C.; Bruelheide, H.; Bombo, A. B.; Fan, Y.; Fidelis, A.; Freschet, G. T.; Hartmann, L.; Hennecke, J.; Howard, C. C.; Jimoh, S. O.; Klimesova, J.; Mommer, L.; Ramalevha, T.; Siebert, F.; Weigelt, A.; Bergmann, J.

2026-05-07 plant biology 10.64898/2026.05.06.723249 medRxiv
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Belowground plant trait research has predominantly focused on trade-offs in fine root traits via the root economics space. Yet, this fine root framework captures only a fraction of the functional strategies plants employ beneath the soil surface. Here, we broaden the perspective on belowground plant functioning by integrating traits related to root system extent, clonality and bud banks, using data from the new UNDERPLOT database. This integration links measurable traits to key belowground functions: resource acquisition, spatial exploration, and persistence. Our analysis shows that the fine root economics space explains less than 5% of the variation in traits related to root system extent, clonality, and bud banks. Instead, an expanded trait analysis reveals three significant dimensions, explaining 62% of total trait variation. The third dimension, represents an independent, persistence-related gradient, not captured by existing root economics frameworks. We propose that understanding belowground plant strategies requires embracing additional functional gradients. The strategy of persistence, in particular, varies significantly across growth forms and is a critical dimension of plant response to resource limitation and stress, becoming increasingly important as global change shifts disturbance regimes.

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Beauty at risk: A taxonomic synopsis of Belemia (Nyctaginaceae), an endangered and endemic genus of vines in Brazil

Cunha-Neto, I. L.; Rossetto, E. F. S.; Goncalves, D. V.; Nogueira, M. G. C.; Antar, G. M.; Rodrigues, V. R. C.; Silva, A. O.; Angyalossy, V.; Sa, C. F. C.

2026-05-13 plant biology 10.64898/2026.05.12.724086 medRxiv
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Belemia belongs to Nyctaginaceae and comprises two species of delicate vines. Both species are endemic to Brazil. Belemia fucsioides, the type species, described in 1981, occurs in a restricted area of the Atlantic Forest in southeastern Brazil. Belemia cordata, described in 2020, is known from only two records from the same area in the Cerrado of northern Brazil. Here, we describe the taxonomic history of Belemia and provide the first synopsis for the genus. We include species description, distribution map, identification key, and anatomical data. We used field observations over the past decade and modeled anthropogenic changes in the species range to conduct a conservation assessment in accordance with the IUCN Red List criteria. Conservation assessments indicate significant concerns for Belemia, classified as either endangered (B. fucsioides) or critically endangered (B. cordata). The species are threatened primarily by habitat loss to land used for agriculture, forestry, and livestock production. This study contributes to ongoing initiatives exploring plant diversity in the Neotropics and supports efforts to identify threats to biodiversity.

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Simulated Microgravity Induces Cultivar-Specific Changes Affecting Salmonella enterica Ingression Independent of Stomatal Physiology

Wiest, T. A.; Bais, H.

2026-05-15 plant biology 10.64898/2026.05.13.724889 medRxiv
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Advances in NASAs astrobiology program have demonstrated the feasibility of cultivating plants in space and in analog extraterrestrial habitats. In addition to abiotic stressors, plants grown in terrestrial and space-like environments are challenged by both phytopathogens and opportunistic human pathogens, with implications for plant productivity and human health. The persistence of human-associated pathogens in spacecraft and space stations raises significant concerns regarding food safety. The molecular, biochemical, and signaling mechanisms governing stomatal development and function under microgravity remain poorly understood. We employed an experimental system incorporating human pathogen Salmonella enterica and lettuce microgreens exposed to simulated microgravity through two-dimensional clinorotation to investigate plant innate immunity and stomatal development and function. We further evaluated four lettuce cultivars to determine whether genetic variation impacts these factors under simulated microgravity conditions. Our findings indicate that simulated microgravity significantly influences stomatal development and function, as evidenced by an increase in stomatal density and variable changes to stomatal aperture. Notably, cultivar-dependent variation in stomatal traits and responses to Salmonella enterica was observed under microgravity conditions. Although increased stomatal density was hypothesized to enhance pathogen ingression, internalization was more strongly predicted by cultivar selection and simulated microgravity; simulated microgravity increased ingression, with red pigmented cultivars having less pathogen than green cultivars. These results suggest that targeted selection of cultivars with favorable physiological traits may improve food safety and the viability of crop production systems in space environments. They also suggest that development and function of stomata may change in spaceflight conditions.